J3_4WT1_040

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4WT1|1|13|U|1212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WT1_040 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1539

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4WT1|1|13|C|990
4WT1|1|13|U|991
4WT1|1|13|U|992
4WT1|1|13|G|993
4WT1|1|13|A|994
4WT1|1|13|C|995
4WT1|1|13|A|996
4WT1|1|13|U|997
*
4WT1|1|13|A|1044
4WT1|1|13|C|1045
4WT1|1|13|A|1046
4WT1|1|13|G|1047
*
4WT1|1|13|C|1210
4WT1|1|13|U|1211
4WT1|1|13|U|1212
4WT1|1|13|A|1213
4WT1|1|13|C|1214
4WT1|1|13|G|1215

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain 5I

30S ribosomal protein S14 type Z