J3_4WT1_042

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4WT1|1|14|U|504, 4WT1|1|14|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WT1_042 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0637

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4WT1|1|14|G|30
4WT1|1|14|C|31
*
4WT1|1|14|G|474
4WT1|1|14|U|475
4WT1|1|14|G|476
4WT1|1|14|A|477
4WT1|1|14|A|478
4WT1|1|14|A|479
4WT1|1|14|A|480
4WT1|1|14|G|481
4WT1|1|14|A|482
4WT1|1|14|A|483
4WT1|1|14|C|484
*
4WT1|1|14|G|496
4WT1|1|14|A|497
4WT1|1|14|G|498
4WT1|1|14|U|499
4WT1|1|14|G|500
4WT1|1|14|A|501
4WT1|1|14|A|502
4WT1|1|14|A|503
4WT1|1|14|U|504
4WT1|1|14|A|505
4WT1|1|14|G|506
4WT1|1|14|A|507
4WT1|1|14|G|508
4WT1|1|14|C|509
4WT1|1|14|C|510

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 85

50S ribosomal protein L20

Chain A5

50S ribosomal protein L22

Chain C5

50S ribosomal protein L24