J3_4WT1_050

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CC*GUGGAU*AAUCG

Length

13 nucleotides

Bulged bases

4WT1|1|14|G|2833, 4WT1|1|14|A|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WT1_050 not in the Motif Atlas

Homologous match to J3_9DFE_019

Geometric discrepancy: 0.1597

The information below is about J3_9DFE_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4WT1|1|14|C|2814
4WT1|1|14|C|2815
*
4WT1|1|14|G|2831
4WT1|1|14|U|2832
4WT1|1|14|G|2833
4WT1|1|14|G|2834
4WT1|1|14|A|2835
4WT1|1|14|U|2836
*
4WT1|1|14|A|2882
4WT1|1|14|A|2883
4WT1|1|14|U|2884
4WT1|1|14|C|2885
4WT1|1|14|G|2886

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L3

Chain 55

50S ribosomal protein L17

Chain J5

50S ribosomal protein L32