3D structure

PDB id
4WT8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
CGC*GGACUGC*GAGGAAGGAG
Length
20 nucleotides
Bulged bases
4WT8|1|Ab|A|1165
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4WT8_006 not in the Motif Atlas
Homologous match to J3_4LFB_018
Geometric discrepancy: 0.1241
The information below is about J3_4LFB_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17791.2
Basepair signature
cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
Number of instances in this motif group
2

Unit IDs

4WT8|1|Ab|C|1099
4WT8|1|Ab|G|1100
4WT8|1|Ab|C|1101
*
4WT8|1|Ab|G|1138
4WT8|1|Ab|G|1139
4WT8|1|Ab|A|1140
4WT8|1|Ab|C|1141
4WT8|1|Ab|U|1142
4WT8|1|Ab|G|1143
4WT8|1|Ab|C|1144
*
4WT8|1|Ab|G|1157
4WT8|1|Ab|A|1158
4WT8|1|Ab|G|1159
4WT8|1|Ab|G|1160
4WT8|1|Ab|A|1161
4WT8|1|Ab|A|1162
4WT8|1|Ab|G|1163
4WT8|1|Ab|G|1164
4WT8|1|Ab|A|1165
4WT8|1|Ab|G|1166

Current chains

Chain Ab
RNA (1504-MER)

Nearby chains

Chain AA
30S ribosomal protein S2
Chain AI
30S ribosomal protein S9
Chain AJ
30S ribosomal protein S10
Chain AN
30S ribosomal protein S14 type Z

Coloring options:


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