J3_4WT8_014

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

4WT8|1|Bb|U|1222

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WT8_014 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1108

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4WT8|1|Bb|C|1219
4WT8|1|Bb|A|1220
4WT8|1|Bb|A|1221
4WT8|1|Bb|U|1222
4WT8|1|Bb|G|1223
*
4WT8|1|Bb|C|1278
4WT8|1|Bb|C|1279
4WT8|1|Bb|C|1280
4WT8|1|Bb|A|1281
4WT8|1|Bb|G|1282
4WT8|1|Bb|U|1283
4WT8|1|Bb|U|1284
4WT8|1|Bb|C|1285
*
4WT8|1|Bb|G|1316
4WT8|1|Bb|C|1317
4WT8|1|Bb|C|1318
4WT8|1|Bb|G|1319

Current chains

Chain Bb

RNA (1504-MER)

Nearby chains

Chain BG

30S ribosomal protein S7

Chain BM

30S ribosomal protein S13

Chain BW

30S ribosomal protein Thx