J3_4WT8_022

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

4WT8|1|D1|G|732, 4WT8|1|D1|G|838

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WT8_022 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.1136

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4WT8|1|D1|C|729
4WT8|1|D1|G|730
4WT8|1|D1|A|731
4WT8|1|D1|G|732
4WT8|1|D1|C|733
4WT8|1|D1|U|734
4WT8|1|D1|A|735
*
4WT8|1|D1|U|819
4WT8|1|D1|A|820
4WT8|1|D1|G|821
*
4WT8|1|D1|C|837
4WT8|1|D1|G|838
4WT8|1|D1|A|839
4WT8|1|D1|G|840

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain D8

50S ribosomal protein L34

Chain DB

50S ribosomal protein L2