J3_4WT8_047

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WT8_047 not in the Motif Atlas

Geometric match to J3_8VTW_036

Geometric discrepancy: 0.0913

The information below is about J3_8VTW_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69021.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

7

Unit IDs

4WT8|1|C1|G|29
4WT8|1|C1|C|30
*
4WT8|1|C1|G|499
4WT8|1|C1|U|500
4WT8|1|C1|G|501
4WT8|1|C1|A|502
4WT8|1|C1|A|503
4WT8|1|C1|A|504
4WT8|1|C1|A|505
4WT8|1|C1|G|506
*
4WT8|1|C1|C|533
4WT8|1|C1|C|534

Current chains

Chain C1

23S rRNA (2899-MER)

Nearby chains

Chain CT

50S ribosomal protein L20

Chain CW

50S ribosomal protein L22

Chain CY

50S ribosomal protein L24