J3_4WT8_052

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

4WT8|1|C1|A|1429

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WT8_052 not in the Motif Atlas

Homologous match to J3_9DFE_012

Geometric discrepancy: 0.1842

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

4WT8|1|C1|G|1389
4WT8|1|C1|C|1390
4WT8|1|C1|G|1391
4WT8|1|C1|G|1392
4WT8|1|C1|G|1393
4WT8|1|C1|A|1394
4WT8|1|C1|C|1395
*
4WT8|1|C1|G|1426
4WT8|1|C1|G|1427
4WT8|1|C1|C|1428
4WT8|1|C1|A|1429
4WT8|1|C1|G|1430
*
4WT8|1|C1|C|1447
4WT8|1|C1|C|1448

Current chains

Chain C1

23S rRNA (2899-MER)

Nearby chains

Chain CX

50S ribosomal protein L23