3D structure

PDB id
4WT8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
CCAUAG*CG*UCG
Length
11 nucleotides
Bulged bases
4WT8|1|Cs|U|14, 4WT8|1|Cs|C|109
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4WT8_057 not in the Motif Atlas
Homologous match to J3_9DFE_020
Geometric discrepancy: 0.1996
The information below is about J3_9DFE_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_12003.2
Basepair signature
cWW-F-cWW-tSS-F-cWW
Number of instances in this motif group
4

Unit IDs

4WT8|1|Cs|C|11
4WT8|1|Cs|C|12
4WT8|1|Cs|A|13
4WT8|1|Cs|U|14
4WT8|1|Cs|A|15
4WT8|1|Cs|G|16
*
4WT8|1|Cs|C|68
4WT8|1|Cs|G|69
*
4WT8|1|Cs|U|108
4WT8|1|Cs|C|109
4WT8|1|Cs|G|110

Current chains

Chain Cs
5S rRNA (119-MER)

Nearby chains

Chain C1
Large subunit ribosomal RNA; LSU rRNA
Chain CZ
50S ribosomal protein L25
Chain Ca
50S ribosomal protein L27

Coloring options:


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