J3_4WT8_059

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4WT8|1|D1|U|528, 4WT8|1|D1|G|532

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WT8_059 not in the Motif Atlas

Homologous match to J3_4WF9_011

Geometric discrepancy: 0.2263

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4WT8|1|D1|G|29
4WT8|1|D1|C|30
*
4WT8|1|D1|G|499
4WT8|1|D1|U|500
4WT8|1|D1|G|501
4WT8|1|D1|A|502
4WT8|1|D1|A|503
4WT8|1|D1|A|504
4WT8|1|D1|A|505
4WT8|1|D1|G|506
4WT8|1|D1|A|507
4WT8|1|D1|A|508
4WT8|1|D1|C|509
*
4WT8|1|D1|G|520
4WT8|1|D1|A|521
4WT8|1|D1|G|522
4WT8|1|D1|U|523
4WT8|1|D1|G|524
4WT8|1|D1|A|525
4WT8|1|D1|A|526
4WT8|1|D1|A|527
4WT8|1|D1|U|528
4WT8|1|D1|A|529
4WT8|1|D1|G|530
4WT8|1|D1|A|531
4WT8|1|D1|G|532
4WT8|1|D1|C|533
4WT8|1|D1|C|534

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain DT

50S ribosomal protein L20

Chain DW

50S ribosomal protein L22

Chain DY

50S ribosomal protein L24