J3_4WT8_060
3D structure
- PDB id
- 4WT8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CUCG*CGAUAGCGCACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 4WT8|1|D1|C|33, 4WT8|1|D1|U|473, 4WT8|1|D1|C|481
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4WT8_060 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.106
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
4WT8|1|D1|C|31
4WT8|1|D1|U|32
4WT8|1|D1|C|33
4WT8|1|D1|G|34
*
4WT8|1|D1|C|470
4WT8|1|D1|G|471
4WT8|1|D1|A|472
4WT8|1|D1|U|473
4WT8|1|D1|A|474
4WT8|1|D1|G|475
4WT8|1|D1|C|476
4WT8|1|D1|G|477
4WT8|1|D1|C|478
4WT8|1|D1|A|479
4WT8|1|D1|C|480
4WT8|1|D1|C|481
4WT8|1|D1|A|482
4WT8|1|D1|G|483
4WT8|1|D1|U|484
4WT8|1|D1|A|485
4WT8|1|D1|C|486
*
4WT8|1|D1|G|493
4WT8|1|D1|G|494
4WT8|1|D1|A|495
4WT8|1|D1|A|496
4WT8|1|D1|A|497
4WT8|1|D1|G|498
Current chains
- Chain D1
- 23S rRNA (2899-MER)
Nearby chains
- Chain D8
- 50S ribosomal protein L34
- Chain DD
- 50S ribosomal protein L4
- Chain DT
- 50S ribosomal protein L20
- Chain DX
- 50S ribosomal protein L23
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