J3_4WT8_064

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WT8_064 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.0984

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4WT8|1|D1|G|1469
4WT8|1|D1|G|1470
4WT8|1|D1|G|1471
4WT8|1|D1|A|1472
4WT8|1|D1|C|1473
4WT8|1|D1|G|1474
*
4WT8|1|D1|C|1610
4WT8|1|D1|C|1611
*
4WT8|1|D1|G|1614
4WT8|1|D1|A|1615
4WT8|1|D1|A|1616
4WT8|1|D1|A|1617
4WT8|1|D1|A|1618
4WT8|1|D1|G|1619
4WT8|1|D1|C|1620

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain DB

50S ribosomal protein L2