J3_4WU1_055
3D structure
- PDB id
- 4WU1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CCCAUAG*CGC*GUCGG
- Length
- 15 nucleotides
- Bulged bases
- 4WU1|1|16|C|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4WU1_055 not in the Motif Atlas
- Homologous match to J3_7A0S_014
- Geometric discrepancy: 0.3051
- The information below is about J3_7A0S_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_13944.1
- Basepair signature
- cWW-F-F-tSS-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
4WU1|1|16|C|10
4WU1|1|16|C|11
4WU1|1|16|C|12
4WU1|1|16|A|13
4WU1|1|16|U|14
4WU1|1|16|A|15
4WU1|1|16|G|16
*
4WU1|1|16|C|68
4WU1|1|16|G|69
4WU1|1|16|C|70
*
4WU1|1|16|G|106
4WU1|1|16|U|107
4WU1|1|16|C|108
4WU1|1|16|G|109
4WU1|1|16|G|110
Current chains
- Chain 16
- 5S ribosomal RNA
Nearby chains
- Chain 1H
- Large subunit ribosomal RNA; LSU rRNA
- Chain A8
- 50S ribosomal protein L18
- Chain H8
- 50S ribosomal protein L25
- Chain I8
- 50S ribosomal protein L27
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