J3_4WU1_068
3D structure
- PDB id
- 4WU1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
- Length
- 28 nucleotides
- Bulged bases
- 4WU1|1|1H|U|504, 4WU1|1|1H|G|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4WU1_068 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.0629
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
4WU1|1|1H|G|30
4WU1|1|1H|C|31
*
4WU1|1|1H|G|474
4WU1|1|1H|U|475
4WU1|1|1H|G|476
4WU1|1|1H|A|477
4WU1|1|1H|A|478
4WU1|1|1H|A|479
4WU1|1|1H|A|480
4WU1|1|1H|G|481
4WU1|1|1H|A|482
4WU1|1|1H|A|483
4WU1|1|1H|C|484
*
4WU1|1|1H|G|496
4WU1|1|1H|A|497
4WU1|1|1H|G|498
4WU1|1|1H|U|499
4WU1|1|1H|G|500
4WU1|1|1H|A|501
4WU1|1|1H|A|502
4WU1|1|1H|A|503
4WU1|1|1H|U|504
4WU1|1|1H|A|505
4WU1|1|1H|G|506
4WU1|1|1H|A|507
4WU1|1|1H|G|508
4WU1|1|1H|C|509
4WU1|1|1H|C|510
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain C8
- 50S ribosomal protein L20
- Chain E8
- 50S ribosomal protein L22
- Chain G8
- 50S ribosomal protein L24
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