J3_4WU1_083

3D structure

PDB id

4WU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WU1_083 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1938

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4WU1|1|1G|C|990
4WU1|1|1G|U|991
4WU1|1|1G|U|992
4WU1|1|1G|G|993
4WU1|1|1G|A|994
4WU1|1|1G|C|995
4WU1|1|1G|A|996
4WU1|1|1G|U|997
*
4WU1|1|1G|A|1044
4WU1|1|1G|C|1045
4WU1|1|1G|A|1046
4WU1|1|1G|G|1047
*
4WU1|1|1G|C|1210
4WU1|1|1G|U|1211
4WU1|1|1G|U|1212
4WU1|1|1G|A|1213
4WU1|1|1G|C|1214
4WU1|1|1G|G|1215

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 5A

30S ribosomal protein S14 type Z