3D structure

PDB id
4WWW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to CEM-101
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CUG*CUAAC*GGACAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4WWW_015 not in the Motif Atlas
Homologous match to J3_5J7L_044
Geometric discrepancy: 0.0484
The information below is about J3_5J7L_044
Detailed Annotation
Kink-turn in J3
Broad Annotation
No text annotation
Motif group
J3_89368.5
Basepair signature
cWW-tSH-tHW-F-cWW-tHH-cWW
Number of instances in this motif group
3

Unit IDs

4WWW|1|RA|C|2091
4WWW|1|RA|U|2092
4WWW|1|RA|G|2093
*
4WWW|1|RA|C|2196
4WWW|1|RA|U|2197
4WWW|1|RA|A|2198
4WWW|1|RA|A|2199
4WWW|1|RA|C|2200
*
4WWW|1|RA|G|2223
4WWW|1|RA|G|2224
4WWW|1|RA|A|2225
4WWW|1|RA|C|2226
4WWW|1|RA|A|2227
4WWW|1|RA|G|2228

Current chains

Chain RA
23S rRNA

Nearby chains

Chain RC
50S ribosomal protein L2
Chain RH
50S ribosomal protein L9
Chain RX
50S ribosomal protein L28
Chain XD
30S ribosomal protein S4

Coloring options:


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