3D structure

PDB id
4WWW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to CEM-101
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CGUCAG*CGCAACC*GAUGACG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4WWW_026 not in the Motif Atlas
Homologous match to J3_5J7L_008
Geometric discrepancy: 0.0924
The information below is about J3_5J7L_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_08394.3
Basepair signature
cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

4WWW|1|XA|C|1063
4WWW|1|XA|G|1064
4WWW|1|XA|U|1065
4WWW|1|XA|C|1066
4WWW|1|XA|A|1067
4WWW|1|XA|G|1068
*
4WWW|1|XA|C|1107
4WWW|1|XA|G|1108
4WWW|1|XA|C|1109
4WWW|1|XA|A|1110
4WWW|1|XA|A|1111
4WWW|1|XA|C|1112
4WWW|1|XA|C|1113
*
4WWW|1|XA|G|1187
4WWW|1|XA|A|1188
4WWW|1|XA|U|1189
4WWW|1|XA|G|1190
4WWW|1|XA|A|1191
4WWW|1|XA|C|1192
4WWW|1|XA|G|1193

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XB
30S ribosomal protein S2
Chain XC
30S ribosomal protein S3
Chain XE
30S ribosomal protein S5
Chain XG
30S ribosomal protein S7
Chain XI
30S ribosomal protein S9
Chain XJ
30S ribosomal protein S10
Chain XN
30S ribosomal protein S14

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3041 s