J3_4WWW_052
3D structure
- PDB id
- 4WWW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to CEM-101
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 4WWW|1|RA|U|34, 4WWW|1|RA|U|448, 4WWW|1|RA|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4WWW_052 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.0587
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
4WWW|1|RA|C|32
4WWW|1|RA|C|33
4WWW|1|RA|U|34
4WWW|1|RA|G|35
*
4WWW|1|RA|C|445
4WWW|1|RA|G|446
4WWW|1|RA|A|447
4WWW|1|RA|U|448
4WWW|1|RA|A|449
4WWW|1|RA|G|450
4WWW|1|RA|U|451
4WWW|1|RA|G|452
4WWW|1|RA|A|453
4WWW|1|RA|A|454
4WWW|1|RA|C|455
4WWW|1|RA|C|456
4WWW|1|RA|A|457
4WWW|1|RA|G|458
4WWW|1|RA|U|459
4WWW|1|RA|A|460
4WWW|1|RA|C|461
*
4WWW|1|RA|G|468
4WWW|1|RA|G|469
4WWW|1|RA|A|470
4WWW|1|RA|A|471
4WWW|1|RA|A|472
4WWW|1|RA|G|473
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R2
- 50S ribosomal protein L34
- Chain RE
- 50S ribosomal protein L4
- Chain RQ
- 50S ribosomal protein L20
- Chain RT
- 50S ribosomal protein L23
Coloring options: