J3_4XEJ_004

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4XEJ_004 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.213

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84394.1

Basepair signature

cWW-tWH-F-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

4XEJ|1|A16S|C|990
4XEJ|1|A16S|U|991
4XEJ|1|A16S|U|992
4XEJ|1|A16S|G|993
*
4XEJ|1|A16S|C|1045
4XEJ|1|A16S|A|1046
4XEJ|1|A16S|G|1047
*
4XEJ|1|A16S|C|1210
4XEJ|1|A16S|U|1211
4XEJ|1|A16S|U|1212
4XEJ|1|A16S|A|1213
4XEJ|1|A16S|C|1214
4XEJ|1|A16S|G|1215

Current chains

Chain A16S

16S ribosomal RNA

Nearby chains

Chain AS14

30S ribosomal protein S14

Chain B23S

Large subunit ribosomal RNA; LSU rRNA