J3_4XEJ_006
3D structure
- PDB id
- 4XEJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- IRES bound to bacterial Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GACGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4XEJ_006 not in the Motif Atlas
- Homologous match to J3_4LFB_007
- Geometric discrepancy: 0.1387
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01343.1
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4XEJ|1|A16S|C|1063
4XEJ|1|A16S|G|1064
4XEJ|1|A16S|U|1065
4XEJ|1|A16S|C|1066
4XEJ|1|A16S|A|1067
4XEJ|1|A16S|G|1068
*
4XEJ|1|A16S|C|1107
4XEJ|1|A16S|G|1108
4XEJ|1|A16S|C|1109
4XEJ|1|A16S|A|1110
4XEJ|1|A16S|A|1111
4XEJ|1|A16S|C|1112
4XEJ|1|A16S|C|1113
*
4XEJ|1|A16S|G|1187
4XEJ|1|A16S|A|1188
4XEJ|1|A16S|C|1189
4XEJ|1|A16S|G|1190
4XEJ|1|A16S|A|1191
4XEJ|1|A16S|C|1192
4XEJ|1|A16S|G|1193
Current chains
- Chain A16S
- 16S ribosomal RNA
Nearby chains
- Chain AS03
- 30S ribosomal protein S3
- Chain AS05
- 30S ribosomal protein S5
- Chain AS07
- 30S ribosomal protein S7
- Chain AS09
- 30S ribosomal protein S9
- Chain AS10
- 30S ribosomal protein S10
- Chain AS14
- 30S ribosomal protein S14
Coloring options: