J3_4XEJ_013

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4XEJ_013 not in the Motif Atlas

Homologous match to J3_7RQB_010

Geometric discrepancy: 0.1022

The information below is about J3_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.3

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

4XEJ|1|A23S|U|2091
4XEJ|1|A23S|U|2092
4XEJ|1|A23S|G|2093
*
4XEJ|1|A23S|C|2196
4XEJ|1|A23S|U|2197
4XEJ|1|A23S|A|2198
4XEJ|1|A23S|A|2199
4XEJ|1|A23S|C|2200
*
4XEJ|1|A23S|G|2223
4XEJ|1|A23S|G|2224
4XEJ|1|A23S|A|2225
4XEJ|1|A23S|C|2226
4XEJ|1|A23S|A|2227
4XEJ|1|A23S|G|2228

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains

Chain AL02

50S ribosomal protein L2

Chain AL09

50S ribosomal protein L9

Chain AL28

50S ribosomal protein L28