J3_4XEJ_030

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4XEJ_030 not in the Motif Atlas

Homologous match to J3_7RQB_007

Geometric discrepancy: 0.1055

The information below is about J3_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.3

Basepair signature

cWW-tSH-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

4XEJ|1|B23S|C|1298
4XEJ|1|B23S|G|1299
4XEJ|1|B23S|U|1300
4XEJ|1|B23S|A|1301
4XEJ|1|B23S|A|1302
4XEJ|1|B23S|G|1303
*
4XEJ|1|B23S|C|1625
4XEJ|1|B23S|G|1626
4XEJ|1|B23S|G|1627
*
4XEJ|1|B23S|U|1639
4XEJ|1|B23S|C|1640
4XEJ|1|B23S|A|1641
4XEJ|1|B23S|G|1642

Current chains

Chain B23S

23S ribosomal RNA

Nearby chains