J3_4XEJ_049

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CCAAG*CGCAAAC*GUGG

Length

16 nucleotides

Bulged bases

4XEJ|1|A23S|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4XEJ_049 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.1698

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

4XEJ|1|A23S|C|1305
4XEJ|1|A23S|C|1306
4XEJ|1|A23S|A|1307
4XEJ|1|A23S|A|1308
4XEJ|1|A23S|G|1309
*
4XEJ|1|A23S|C|1605
4XEJ|1|A23S|G|1606
4XEJ|1|A23S|C|1607
4XEJ|1|A23S|A|1608
4XEJ|1|A23S|A|1609
4XEJ|1|A23S|A|1610
4XEJ|1|A23S|C|1611
*
4XEJ|1|A23S|G|1620
4XEJ|1|A23S|U|1621
4XEJ|1|A23S|G|1622
4XEJ|1|A23S|G|1623

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains

Chain AL34

50S ribosomal protein L34