J3_4XEJ_051

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4XEJ_051 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0969

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

4XEJ|1|A23S|G|1424
4XEJ|1|A23S|G|1425
4XEJ|1|A23S|G|1426
4XEJ|1|A23S|A|1427
4XEJ|1|A23S|C|1428
4XEJ|1|A23S|G|1429
*
4XEJ|1|A23S|C|1564
4XEJ|1|A23S|C|1565
*
4XEJ|1|A23S|G|1568
4XEJ|1|A23S|A|1569
4XEJ|1|A23S|A|1570
4XEJ|1|A23S|A|1571
4XEJ|1|A23S|A|1572
4XEJ|1|A23S|G|1573
4XEJ|1|A23S|C|1574

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains

Chain AL02

50S ribosomal protein L2