J3_4XEJ_055

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GC*GGAAUCU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4XEJ_055 not in the Motif Atlas

Geometric match to J3_4LFB_010

Geometric discrepancy: 0.117

The information below is about J3_4LFB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.1

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4XEJ|1|B16S|G|46
4XEJ|1|B16S|C|47
*
4XEJ|1|B16S|G|361
4XEJ|1|B16S|G|362
4XEJ|1|B16S|A|363
4XEJ|1|B16S|A|364
4XEJ|1|B16S|U|365
4XEJ|1|B16S|C|366
4XEJ|1|B16S|U|367
*
4XEJ|1|B16S|A|393
4XEJ|1|B16S|G|394
4XEJ|1|B16S|C|395

Current chains

Chain B16S

16S ribosomal RNA

Nearby chains

Chain BS12

30S ribosomal protein S12

Chain BS16

30S ribosomal protein S16