J3_4XEJ_064

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4XEJ_064 not in the Motif Atlas

Geometric match to J3_8VTW_036

Geometric discrepancy: 0.1032

The information below is about J3_8VTW_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69021.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

7

Unit IDs

4XEJ|1|B23S|G|30
4XEJ|1|B23S|C|31
*
4XEJ|1|B23S|G|474
4XEJ|1|B23S|U|475
4XEJ|1|B23S|G|476
4XEJ|1|B23S|A|477
4XEJ|1|B23S|A|478
4XEJ|1|B23S|A|479
4XEJ|1|B23S|A|480
4XEJ|1|B23S|G|481
*
4XEJ|1|B23S|C|509
4XEJ|1|B23S|C|510

Current chains

Chain B23S

23S ribosomal RNA

Nearby chains

Chain BL20

50S ribosomal protein L20

Chain BL22

50S ribosomal protein L22

Chain BL24

50S ribosomal protein L24