J3_4XEJ_071

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

4XEJ|1|B23S|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4XEJ_071 not in the Motif Atlas

Homologous match to J3_9DFE_012

Geometric discrepancy: 0.137

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

4XEJ|1|B23S|G|1344
4XEJ|1|B23S|C|1345
4XEJ|1|B23S|G|1346
4XEJ|1|B23S|G|1347
4XEJ|1|B23S|G|1348
4XEJ|1|B23S|A|1349
4XEJ|1|B23S|C|1350
*
4XEJ|1|B23S|G|1381
4XEJ|1|B23S|G|1382
4XEJ|1|B23S|C|1383
4XEJ|1|B23S|A|1384
4XEJ|1|B23S|G|1385
*
4XEJ|1|B23S|C|1402
4XEJ|1|B23S|C|1403

Current chains

Chain B23S

23S ribosomal RNA

Nearby chains

Chain BL23

50S ribosomal protein L23