J3_4XEJ_081
3D structure
- PDB id
- 4XEJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- IRES bound to bacterial Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- UG*UGUU*GCAA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4XEJ_081 not in the Motif Atlas
- Homologous match to J3_4LFB_017
- Geometric discrepancy: 0.1447
- The information below is about J3_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11018.1
- Basepair signature
- cWW-cWW-tSS-F-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
4XEJ|1|A16S|U|1073
4XEJ|1|A16S|G|1074
*
4XEJ|1|A16S|U|1083
4XEJ|1|A16S|G|1084
4XEJ|1|A16S|U|1085
4XEJ|1|A16S|U|1086
*
4XEJ|1|A16S|G|1099
4XEJ|1|A16S|C|1100
4XEJ|1|A16S|A|1101
4XEJ|1|A16S|A|1102
Current chains
- Chain A16S
- 16S ribosomal RNA
Nearby chains
- Chain AS02
- 30S ribosomal protein S2
- Chain AS05
- 30S ribosomal protein S5
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