J3_4Y4O_004

3D structure

PDB id

4Y4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4Y4O_004 not in the Motif Atlas

Homologous match to J3_7RQB_007

Geometric discrepancy: 0.0317

The information below is about J3_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.3

Basepair signature

cWW-tSH-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

4Y4O|1|1A|C|1344
4Y4O|1|1A|G|1345
4Y4O|1|1A|U|1346
4Y4O|1|1A|A|1347
4Y4O|1|1A|A|1348
4Y4O|1|1A|G|1349
*
4Y4O|1|1A|C|1671
4Y4O|1|1A|G|1672
4Y4O|1|1A|G|1673
*
4Y4O|1|1A|U|1686
4Y4O|1|1A|C|1687
4Y4O|1|1A|A|1688
4Y4O|1|1A|G|1689

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains