J3_4Y4O_013
3D structure
- PDB id
- 4Y4O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 4Y4O|1|1a|A|975, 4Y4O|1|1a|G|976, 4Y4O|1|1a|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4Y4O_013 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.0445
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4Y4O|1|1a|U|955
4Y4O|1|1a|U|956
4Y4O|1|1a|U|957
4Y4O|1|1a|A|958
4Y4O|1|1a|A|959
4Y4O|1|1a|U|960
4Y4O|1|1a|U|961
4Y4O|1|1a|C|962
*
4Y4O|1|1a|G|973
4Y4O|1|1a|A|974
4Y4O|1|1a|A|975
4Y4O|1|1a|G|976
4Y4O|1|1a|A|977
4Y4O|1|1a|A|978
4Y4O|1|1a|C|979
4Y4O|1|1a|C|980
4Y4O|1|1a|U|981
4Y4O|1|1a|U|982
4Y4O|1|1a|A|983
4Y4O|1|1a|C|984
*
4Y4O|1|1a|G|1221
4Y4O|1|1a|G|1222
4Y4O|1|1a|C|1223
4Y4O|1|1a|G|1224
4Y4O|1|1a|A|1225
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1j
- 30S ribosomal protein S10
- Chain 1m
- 30S ribosomal protein S13
- Chain 1n
- 30S ribosomal protein S14 type Z
- Chain 1s
- 30S ribosomal protein S19
- Chain 1y
- Ribosome-associated inhibitor A
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