J3_4Y4O_018
3D structure
- PDB id
- 4Y4O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- CAAUG*CCCAGUUC*GCCG
- Length
- 17 nucleotides
- Bulged bases
- 4Y4O|1|1a|U|1240, 4Y4O|1|1a|U|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4Y4O_018 not in the Motif Atlas
- Homologous match to J3_4LFB_009
- Geometric discrepancy: 0.09
- The information below is about J3_4LFB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03192.1
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
- Number of instances in this motif group
- 5
Unit IDs
4Y4O|1|1a|C|1237
4Y4O|1|1a|A|1238
4Y4O|1|1a|A|1239
4Y4O|1|1a|U|1240
4Y4O|1|1a|G|1241
*
4Y4O|1|1a|C|1296
4Y4O|1|1a|C|1297
4Y4O|1|1a|C|1298
4Y4O|1|1a|A|1299
4Y4O|1|1a|G|1300
4Y4O|1|1a|U|1301
4Y4O|1|1a|U|1302
4Y4O|1|1a|C|1303
*
4Y4O|1|1a|G|1334
4Y4O|1|1a|C|1335
4Y4O|1|1a|C|1336
4Y4O|1|1a|G|1337
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1g
- 30S ribosomal protein S7
- Chain 1m
- 30S ribosomal protein S13
- Chain 1u
- 30S ribosomal protein Thx
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