J3_4Y4O_043

3D structure

PDB id

4Y4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4Y4O_043 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0471

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

4Y4O|1|1A|G|1470
4Y4O|1|1A|G|1471
4Y4O|1|1A|G|1472
4Y4O|1|1A|A|1473
4Y4O|1|1A|C|1474
4Y4O|1|1A|G|1475
*
4Y4O|1|1A|C|1611
4Y4O|1|1A|C|1612
*
4Y4O|1|1A|G|1615
4Y4O|1|1A|A|1616
4Y4O|1|1A|A|1617
4Y4O|1|1A|A|1618
4Y4O|1|1A|A|1619
4Y4O|1|1A|G|1620
4Y4O|1|1A|C|1621

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2