J3_4Y4O_046
3D structure
- PDB id
- 4Y4O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- CCAUAG*CG*UCG
- Length
- 11 nucleotides
- Bulged bases
- 4Y4O|1|1B|U|14, 4Y4O|1|1B|C|109
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4Y4O_046 not in the Motif Atlas
- Homologous match to J3_9DFE_020
- Geometric discrepancy: 0.0498
- The information below is about J3_9DFE_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4Y4O|1|1B|C|11
4Y4O|1|1B|C|12
4Y4O|1|1B|A|13
4Y4O|1|1B|U|14
4Y4O|1|1B|A|15
4Y4O|1|1B|G|16
*
4Y4O|1|1B|C|68
4Y4O|1|1B|G|69
*
4Y4O|1|1B|U|108
4Y4O|1|1B|C|109
4Y4O|1|1B|G|110
Current chains
- Chain 1B
- 5S Ribosomal RNA
Nearby chains
- Chain 10
- 50S ribosomal protein L27
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1S
- 50S ribosomal protein L18
- Chain 1Z
- 50S ribosomal protein L25
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