J3_4Y4O_066

3D structure

PDB id

4Y4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

4Y4O|1|2a|C|48, 4Y4O|1|2a|A|50, 4Y4O|1|2a|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4Y4O_066 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.0539

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4Y4O|1|2a|G|46
4Y4O|1|2a|C|47
4Y4O|1|2a|C|48
4Y4O|1|2a|U|49
4Y4O|1|2a|A|50
4Y4O|1|2a|A|51
4Y4O|1|2a|G|52
*
4Y4O|1|2a|U|359
4Y4O|1|2a|A|360
4Y4O|1|2a|G|361
4Y4O|1|2a|G|362
4Y4O|1|2a|A|363
4Y4O|1|2a|A|364
4Y4O|1|2a|U|365
4Y4O|1|2a|C|366
4Y4O|1|2a|U|367
*
4Y4O|1|2a|A|393
4Y4O|1|2a|G|394
4Y4O|1|2a|C|395

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12

Chain 2p

30S ribosomal protein S16