3D structure

PDB id
4Y4P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.5 Å

Loop

Sequence
CUCG*CGAUAGCGCACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
4Y4P|1|1A|U|474, 4Y4P|1|1A|C|482
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4Y4P_034 not in the Motif Atlas
Homologous match to J3_9DFE_003
Geometric discrepancy: 0.0602
The information below is about J3_9DFE_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

4Y4P|1|1A|C|32
4Y4P|1|1A|U|33
4Y4P|1|1A|C|34
4Y4P|1|1A|G|35
*
4Y4P|1|1A|C|471
4Y4P|1|1A|G|472
4Y4P|1|1A|A|473
4Y4P|1|1A|U|474
4Y4P|1|1A|A|475
4Y4P|1|1A|G|476
4Y4P|1|1A|C|477
4Y4P|1|1A|G|478
4Y4P|1|1A|C|479
4Y4P|1|1A|A|480
4Y4P|1|1A|C|481
4Y4P|1|1A|C|482
4Y4P|1|1A|A|483
4Y4P|1|1A|G|484
4Y4P|1|1A|U|485
4Y4P|1|1A|A|486
4Y4P|1|1A|C|487
*
4Y4P|1|1A|G|494
4Y4P|1|1A|G|495
4Y4P|1|1A|A|496
4Y4P|1|1A|A|497
4Y4P|1|1A|A|498
4Y4P|1|1A|G|499

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 17
50S ribosomal protein L34
Chain 1F
50S ribosomal protein L4
Chain 1U
50S ribosomal protein L20
Chain 1X
50S ribosomal protein L23

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3893 s