J3_4YB1_001

3D structure

PDB id

4YB1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

20A Mutant c-di-GMP Vc2 Riboswitch bound with 3',3'-cGAMP

Experimental method

X-RAY DIFFRACTION

Resolution

2.08 Å

Loop

Sequence

GCACAGAG*CAAAG*UUACC

Length

18 nucleotides

Bulged bases

4YB1|1|R|C|15

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4YB1_001 not in the Motif Atlas

Homologous match to J3_4YAZ_002

Geometric discrepancy: 0.3424

The information below is about J3_4YAZ_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_96372.2

Basepair signature

cWW-cHS-F-cWS-cWW-F-tHW-cWW-F-cWW-F

Number of instances in this motif group

3

Unit IDs

4YB1|1|R|G|14
4YB1|1|R|C|15
4YB1|1|R|A|16
4YB1|1|R|C|17
4YB1|1|R|A|18
4YB1|1|R|G|19
4YB1|1|R|A|20
4YB1|1|R|G|21
*
4YB1|1|R|C|46
4YB1|1|R|A|47
4YB1|1|R|A|48
4YB1|1|R|A|49
4YB1|1|R|G|50
*
4YB1|1|R|U|90
4YB1|1|R|U|91
4YB1|1|R|A|92
4YB1|1|R|C|93
4YB1|1|R|C|94

Current chains

Chain R

RNA (91-MER)

Nearby chains

Chain P

U1 small nuclear ribonucleoprotein A