J3_4YBB_001

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4YBB|1|AA|U|871, 4YBB|1|AA|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4YBB_001 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0467

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4YBB|1|AA|C|826
4YBB|1|AA|U|827
4YBB|1|AA|U|828
4YBB|1|AA|G|829
*
4YBB|1|AA|C|857
4YBB|1|AA|G|858
4YBB|1|AA|G|859
4YBB|1|AA|A|860
4YBB|1|AA|G|861
*
4YBB|1|AA|C|868
4YBB|1|AA|G|869
4YBB|1|AA|U|870
4YBB|1|AA|U|871
4YBB|1|AA|A|872
4YBB|1|AA|A|873
4YBB|1|AA|G|874

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AH

30S ribosomal protein S8

Chain AU

30S ribosomal protein S21