J3_4YBB_015

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

4YBB|1|BA|U|1240, 4YBB|1|BA|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4YBB_015 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1796

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4YBB|1|BA|C|1237
4YBB|1|BA|A|1238
4YBB|1|BA|A|1239
4YBB|1|BA|U|1240
4YBB|1|BA|G|1241
*
4YBB|1|BA|C|1296
4YBB|1|BA|G|1297
4YBB|1|BA|U|1298
4YBB|1|BA|A|1299
4YBB|1|BA|G|1300
4YBB|1|BA|U|1301
4YBB|1|BA|C|1302
4YBB|1|BA|C|1303
*
4YBB|1|BA|G|1334
4YBB|1|BA|U|1335
4YBB|1|BA|C|1336
4YBB|1|BA|G|1337

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BG

30S ribosomal protein S7

Chain BM

30S ribosomal protein S13