J3_4YBB_069

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4YBB_069 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0344

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4YBB|1|DA|G|1424
4YBB|1|DA|G|1425
4YBB|1|DA|G|1426
4YBB|1|DA|A|1427
4YBB|1|DA|C|1428
4YBB|1|DA|G|1429
*
4YBB|1|DA|C|1564
4YBB|1|DA|C|1565
*
4YBB|1|DA|G|1568
4YBB|1|DA|A|1569
4YBB|1|DA|A|1570
4YBB|1|DA|A|1571
4YBB|1|DA|A|1572
4YBB|1|DA|G|1573
4YBB|1|DA|C|1574

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DC

50S ribosomal protein L2