J3_4YHH_015
3D structure
- PDB id
- 4YHH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 30S ribosomal subunit from Thermus thermophilus in complex with tigecycline
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.42 Å
Loop
- Sequence
- UG*CGCCGAUGG*CAG
- Length
- 14 nucleotides
- Bulged bases
- 4YHH|1|A|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4YHH_015 not in the Motif Atlas
- Homologous match to J3_4LFB_012
- Geometric discrepancy: 0.173
- The information below is about J3_4LFB_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74074.1
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4YHH|1|A|U|672
4YHH|1|A|G|673
*
4YHH|1|A|C|717
4YHH|1|A|G|718
4YHH|1|A|C|719
4YHH|1|A|C|720
4YHH|1|A|G|721
4YHH|1|A|A|722
4YHH|1|A|U|723
4YHH|1|A|G|724
4YHH|1|A|G|725
*
4YHH|1|A|C|732
4YHH|1|A|A|733
4YHH|1|A|G|734
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain F
- 30S ribosomal protein S6
- Chain K
- 30S ribosomal protein S11
- Chain O
- 30S ribosomal protein S15
- Chain R
- 30S ribosomal protein S18
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