J3_4YPB_017

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

4YPB|1|RA|A|2518, 4YPB|1|RA|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4YPB_017 not in the Motif Atlas

Homologous match to J3_7A0S_011

Geometric discrepancy: 0.1189

The information below is about J3_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

4YPB|1|RA|C|2517
4YPB|1|RA|A|2518
4YPB|1|RA|U|2519
4YPB|1|RA|C|2520
*
4YPB|1|RA|G|2545
4YPB|1|RA|U|2546
4YPB|1|RA|U|2547
*
4YPB|1|RA|A|2561
4YPB|1|RA|U|2562
4YPB|1|RA|U|2563
4YPB|1|RA|A|2564
4YPB|1|RA|A|2565
4YPB|1|RA|A|2566
4YPB|1|RA|G|2567

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RN

50S ribosomal protein L13

Chain RO

50S ribosomal protein L14