J3_4YPB_019

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4YPB|1|XA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4YPB_019 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.1006

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4YPB|1|XA|C|826
4YPB|1|XA|U|827
4YPB|1|XA|A|828
4YPB|1|XA|G|829
*
4YPB|1|XA|C|857
4YPB|1|XA|G|858
4YPB|1|XA|A|859
4YPB|1|XA|A|860
4YPB|1|XA|G|861
*
4YPB|1|XA|C|868
4YPB|1|XA|G|869
4YPB|1|XA|U|870
4YPB|1|XA|U|871
4YPB|1|XA|A|872
4YPB|1|XA|A|873
4YPB|1|XA|G|874

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XB

30S ribosomal protein S2

Chain XH

30S ribosomal protein S8