J3_4YPB_060
3D structure
- PDB id
- 4YPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- UG*CGCCGAUGG*CAG
- Length
- 14 nucleotides
- Bulged bases
- 4YPB|1|XA|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4YPB_060 not in the Motif Atlas
- Homologous match to J3_4LFB_012
- Geometric discrepancy: 0.1483
- The information below is about J3_4LFB_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4YPB|1|XA|U|672
4YPB|1|XA|G|673
*
4YPB|1|XA|C|717
4YPB|1|XA|G|718
4YPB|1|XA|C|719
4YPB|1|XA|C|720
4YPB|1|XA|G|721
4YPB|1|XA|A|722
4YPB|1|XA|U|723
4YPB|1|XA|G|724
4YPB|1|XA|G|725
*
4YPB|1|XA|C|732
4YPB|1|XA|A|733
4YPB|1|XA|G|734
Current chains
- Chain XA
- 16S rRNA
Nearby chains
- Chain XF
- 30S ribosomal protein S6
- Chain XK
- 30S ribosomal protein S11
- Chain XO
- 30S ribosomal protein S15
- Chain XR
- 30S ribosomal protein S18
- Chain XX
- messenger RNA
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