J3_4YPB_076

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4YPB|1|QA|U|1212, 4YPB|1|QA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4YPB_076 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1363

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4YPB|1|QA|C|990
4YPB|1|QA|U|991
4YPB|1|QA|U|992
4YPB|1|QA|G|993
4YPB|1|QA|A|994
4YPB|1|QA|C|995
4YPB|1|QA|A|996
4YPB|1|QA|U|997
*
4YPB|1|QA|A|1044
4YPB|1|QA|C|1045
4YPB|1|QA|A|1046
4YPB|1|QA|G|1047
*
4YPB|1|QA|C|1210
4YPB|1|QA|U|1211
4YPB|1|QA|U|1212
4YPB|1|QA|A|1213
4YPB|1|QA|C|1214
4YPB|1|QA|G|1215

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QN

30S ribosomal protein S14

Chain QY

Host inhibition of growth B

Chain YA

Large subunit ribosomal RNA; LSU rRNA