J3_4YZV_001

3D structure

PDB id

4YZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4YZV|1|QA|U|871, 4YZV|1|QA|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4YZV_001 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.099

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4YZV|1|QA|C|826
4YZV|1|QA|U|827
4YZV|1|QA|A|828
4YZV|1|QA|G|829
*
4YZV|1|QA|C|857
4YZV|1|QA|G|858
4YZV|1|QA|A|859
4YZV|1|QA|A|860
4YZV|1|QA|G|861
*
4YZV|1|QA|C|868
4YZV|1|QA|G|869
4YZV|1|QA|U|870
4YZV|1|QA|U|871
4YZV|1|QA|A|872
4YZV|1|QA|A|873
4YZV|1|QA|G|874

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QB

30S ribosomal protein S2

Chain QH

30S ribosomal protein S8