J3_4YZV_055
3D structure
- PDB id
- 4YZV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CC*GUGGAU*AAUCG
- Length
- 13 nucleotides
- Bulged bases
- 4YZV|1|RA|G|2833, 4YZV|1|RA|A|2835
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4YZV_055 not in the Motif Atlas
- Homologous match to J3_9DFE_019
- Geometric discrepancy: 0.1412
- The information below is about J3_9DFE_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76911.2
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
4YZV|1|RA|C|2814
4YZV|1|RA|C|2815
*
4YZV|1|RA|G|2831
4YZV|1|RA|U|2832
4YZV|1|RA|G|2833
4YZV|1|RA|G|2834
4YZV|1|RA|A|2835
4YZV|1|RA|U|2836
*
4YZV|1|RA|A|2882
4YZV|1|RA|A|2883
4YZV|1|RA|U|2884
4YZV|1|RA|C|2885
4YZV|1|RA|G|2886
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R5
- 50S ribosomal protein L32
- Chain RE
- 50S ribosomal protein L3
- Chain RR
- 50S ribosomal protein L17
- Chain RT
- 50S ribosomal protein L19
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