J3_4Z8C_052

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4Z8C|1|2A|U|528, 4Z8C|1|2A|G|532

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4Z8C_052 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0503

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4Z8C|1|2A|G|29
4Z8C|1|2A|C|30
*
4Z8C|1|2A|G|499
4Z8C|1|2A|U|500
4Z8C|1|2A|G|501
4Z8C|1|2A|A|502
4Z8C|1|2A|A|503
4Z8C|1|2A|A|504
4Z8C|1|2A|A|505
4Z8C|1|2A|G|506
4Z8C|1|2A|A|507
4Z8C|1|2A|A|508
4Z8C|1|2A|C|509
*
4Z8C|1|2A|G|520
4Z8C|1|2A|A|521
4Z8C|1|2A|G|522
4Z8C|1|2A|U|523
4Z8C|1|2A|G|524
4Z8C|1|2A|A|525
4Z8C|1|2A|A|526
4Z8C|1|2A|A|527
4Z8C|1|2A|U|528
4Z8C|1|2A|A|529
4Z8C|1|2A|G|530
4Z8C|1|2A|A|531
4Z8C|1|2A|G|532
4Z8C|1|2A|C|533
4Z8C|1|2A|C|534

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2U

50S ribosomal protein L20

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24