J3_4ZER_025

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4ZER|1|2a|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4ZER_025 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.073

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02285.1

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

2

Unit IDs

4ZER|1|2a|C|826
4ZER|1|2a|U|827
4ZER|1|2a|A|828
4ZER|1|2a|G|829
*
4ZER|1|2a|C|857
4ZER|1|2a|G|858
4ZER|1|2a|A|859
4ZER|1|2a|A|860
4ZER|1|2a|G|861
*
4ZER|1|2a|C|868
4ZER|1|2a|G|869
4ZER|1|2a|U|870
4ZER|1|2a|U|871
4ZER|1|2a|A|872
4ZER|1|2a|A|873
4ZER|1|2a|G|874

Current chains

Chain 2a

16s ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2h

30S ribosomal protein S8