J3_4ZER_053
3D structure
- PDB id
- 4ZER (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUCG*CGAUAGCGCACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 4ZER|1|2A|U|448, 4ZER|1|2A|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4ZER_053 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.0618
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
4ZER|1|2A|C|32
4ZER|1|2A|U|33
4ZER|1|2A|C|34
4ZER|1|2A|G|35
*
4ZER|1|2A|C|445
4ZER|1|2A|G|446
4ZER|1|2A|A|447
4ZER|1|2A|U|448
4ZER|1|2A|A|449
4ZER|1|2A|G|450
4ZER|1|2A|C|451
4ZER|1|2A|G|452
4ZER|1|2A|C|453
4ZER|1|2A|A|454
4ZER|1|2A|C|455
4ZER|1|2A|C|456
4ZER|1|2A|A|457
4ZER|1|2A|G|458
4ZER|1|2A|U|459
4ZER|1|2A|A|460
4ZER|1|2A|C|461
*
4ZER|1|2A|G|468
4ZER|1|2A|G|469
4ZER|1|2A|A|470
4ZER|1|2A|A|471
4ZER|1|2A|A|472
4ZER|1|2A|G|473
Current chains
- Chain 2A
- 23s ribosomal RNA
Nearby chains
- Chain 27
- 50S ribosomal protein L34
- Chain 2F
- 50S ribosomal protein L4
- Chain 2U
- 50S ribosomal protein L20
- Chain 2X
- 50S ribosomal protein L23
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