J3_4ZER_067

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4ZER|1|2a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4ZER_067 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1604

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4ZER|1|2a|C|990
4ZER|1|2a|U|991
4ZER|1|2a|U|992
4ZER|1|2a|G|993
4ZER|1|2a|A|994
4ZER|1|2a|C|995
4ZER|1|2a|A|996
4ZER|1|2a|U|997
*
4ZER|1|2a|A|1044
4ZER|1|2a|C|1045
4ZER|1|2a|A|1046
4ZER|1|2a|G|1047
*
4ZER|1|2a|C|1210
4ZER|1|2a|U|1211
4ZER|1|2a|U|1212
4ZER|1|2a|A|1213
4ZER|1|2a|C|1214
4ZER|1|2a|G|1215

Current chains

Chain 2a

16s ribosomal RNA

Nearby chains

Chain 2n

30S ribosomal protein S14 type Z